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-rw-r--r--libre/sagemath/PKGBUILD38
-rw-r--r--libre/sagemath/clean.patch4
-rw-r--r--libre/sagemath/python-2.7.11.patch11
3 files changed, 28 insertions, 25 deletions
diff --git a/libre/sagemath/PKGBUILD b/libre/sagemath/PKGBUILD
index cd53575a6..3a16be1b6 100644
--- a/libre/sagemath/PKGBUILD
+++ b/libre/sagemath/PKGBUILD
@@ -1,4 +1,4 @@
-# $Id: PKGBUILD 150202 2015-12-08 09:14:14Z foutrelis $
+# $Id: PKGBUILD 153716 2015-12-19 11:03:07Z arojas $
# Maintainer (Arch): Evgeniy Alekseev <arcanis.arch at gmail dot com>
# Maintainer (Arch): Antonio Rojas <arojas@archlinux.org>
# Contributor (Arch): Daniel Wallace <danielwallace at gtmanfred dot com>
@@ -10,14 +10,14 @@
# Maintainer: André Silva <emulatorman@parabola.nu>
pkgname=sagemath
-pkgver=6.9
-pkgrel=5.parabola1
+pkgver=6.10
+pkgrel=2.parabola1
pkgdesc="Free Mathematics Software, free software replacement of Magma, Maple, Mathematica, and Matlab, without nonfree nauty recommendation"
arch=(i686 x86_64)
url="http://www.sagemath.org"
license=(GPL)
depends=(ipython2 atlas-lapack ppl mpfi palp brial singular libcliquer maxima-ecl gfan sympow tachyon python2-rpy2
- python2-matplotlib python2-scipy python2-sympy python2-networkx python2-igraph libgap gap flintqs lcalc lrcalc lrs
+ python2-matplotlib python2-scipy python2-sympy python2-networkx python2-igraph libgap flintqs lcalc lrcalc lrs arb
eclib gmp-ecm zn_poly gd python2-cvxopt pynac linbox gsl rubiks pari-galdata pari-seadata-small planarity rankwidth
sage-data-combinatorial_designs sage-data-elliptic_curves sage-data-graphs sage-data-polytopes_db sage-data-conway_polynomials)
optdepends=('cython2: to compile cython code' 'jmol: 3D plots' 'sage-notebook: Browser-based (flask) notebook interface'
@@ -25,35 +25,30 @@ optdepends=('cython2: to compile cython code' 'jmol: 3D plots' 'sage-notebook: B
'coin-or-cbc: COIN backend for numerical computations'
'buckygen: for generating fullerene graphs' 'plantri: for generating some classes of graphs' 'benzene: for generating fusenes and benzenoids'
'modular_decomposition: modular decomposition of graphs' 'ffmpeg: to export animations to video' 'imagemagick: to show animations'
- 'coxeter3: Coxeter groups implementation' 'cryptominisat: SAT solver' 'arb: floating-point ball arithmetic')
+ 'coxeter3: Coxeter groups implementation' 'cryptominisat: SAT solver')
makedepends=(cython2 boost ratpoints symmetrica fflas-ffpack python2-jinja coin-or-cbc
- mcqd coxeter3 cryptominisat arb modular_decomposition bliss-graphs) # libfes
+ mcqd coxeter3 cryptominisat modular_decomposition bliss-graphs tdlib) # libfes
conflicts=(sage-mathematics)
replaces=(sage-mathematics)
provides=(sage-mathematics)
source=("$pkgname-$pkgver.tar.gz::https://github.com/sagemath/sage/archive/$pkgver.tar.gz"
"http://mirrors.mit.edu/sage/spkg/upstream/pexpect/pexpect-2.0.tar.bz2"
anal.h package.patch env.patch paths.patch clean.patch skip-check.patch
- pexpect-env.patch pexpect-del.patch disable-fes.patch jupyter-path.patch test-optional.patch
- pari-sage-2.8.1813.patch::"http://git.sagemath.org/sage.git/patch/?id=c1f5aa26e"
- jupyter-kernel.patch::"http://git.sagemath.org/sage.git/patch/?id=4f06d3df"
- relative-links.patch::"http://git.sagemath.org/sage.git/patch/src/sage/repl/ipython_kernel/kernel.py?id=52a717a7")
-md5sums=('847ad447eaef17b2bc81bb4fae69c190'
+ pexpect-env.patch pexpect-del.patch disable-fes.patch jupyter-path.patch test-optional.patch python-2.7.11.patch)
+md5sums=('3c92d9cc67e2be5bc7802427e84b9b71'
'd9a3e113ed147dcee8f89962a8dccd43'
'a906a180d198186a39820b0a2f9a9c63'
'9ba81f717ffd4e20b8b2f2a318307488'
'e1b1d0d2e6b187309ae2b74489356b9a'
'fd8e3e07f5b7318e6a7200a3c64f5bc2'
- '23e972753be1e5d0f761a7f82a95cebf'
+ '6d9ae0978ce6a05a0da2cafdfb178a09'
'5947a420a0b1483f0cbc74c76895789b'
'a83a3b1bc7fcb7cbf752a83a8311fc42'
'f333939ea6c41377b66407c81016cee4'
'4eb23a3c7363258bc9ba764d6e5512ba'
'16b529194c6105c3364127bd8f1efa83'
'cdcabd475b80afe0534a5621e972736e'
- '01229c3dabbb5fe13348d8c8c31da710'
- 'f91e760a251fe1042fa9f2aad68b6b02'
- 'fe3c5ef5b30a19c632d7fad0ee58c7c4')
+ 'ef927896f2071b442b1d07d7e69f5f3a')
prepare(){
cd sage-$pkgver
@@ -82,23 +77,20 @@ prepare(){
sed -e 's|graph.hh|bliss/graph.hh|' -i src/sage/graphs/bliss.pyx
# don't list optional packages when running tests
patch -p0 -i ../test-optional.patch
+# set jupyter path
+ patch -p0 -i ../jupyter-path.patch
+# fix timeit with Python 2.7.11
+ patch -p0 -i ../python-2.7.11.patch
# Upstream patches
# fix build against libfes 0.2 http://trac.sagemath.org/ticket/15209
# patch -p0 -i ../fes02.patch
# disable fes module, fails to compile
patch -p0 -i ../disable-fes.patch
-# port to pari-sage 2.8.1813
- patch -p1 -i ../pari-sage-2.8.1813.patch
-# install jupyter kernel
- patch -p1 -i ../relative-links.patch
- patch -p1 -i ../jupyter-kernel.patch
-# set jupyter path
- patch -p0 -i ../jupyter-path.patch
# use python2
sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' -e 's|exec python|exec python2|' -i src/bin/*
- sed -e 's|cython %s %s|cython2 %s %s|' -e 's|python setup.py|python2 setup.py|' -i src/sage/misc/cython.py
+ sed -e 's|cython {OPT}|cython2 {OPT}|' -e 's|python setup.py|python2 setup.py|' -i src/sage/misc/cython.py
sed -e 's|exec ipython|exec ipython2|' -e 's|cygdb|cygdb2|' -i src/bin/sage
sed -e "s|'cython'|'cython2'|" -i src/bin/sage-cython
sed -e 's|python -c|python2 -c|' -i src/Makefile
diff --git a/libre/sagemath/clean.patch b/libre/sagemath/clean.patch
index c4baf9bca..cfca01fcb 100644
--- a/libre/sagemath/clean.patch
+++ b/libre/sagemath/clean.patch
@@ -1,6 +1,6 @@
--- src/setup.py.orig 2014-11-16 10:34:05.521441703 +0100
+++ src/setup.py 2014-11-16 10:34:16.054812569 +0100
-@@ -581,21 +581,6 @@
+@@ -620,21 +620,6 @@
#########################################################
@@ -19,6 +19,6 @@
-
-
-#########################################################
- ### Distutils
+ ### Install also Jupyter kernel spec
#########################################################
diff --git a/libre/sagemath/python-2.7.11.patch b/libre/sagemath/python-2.7.11.patch
new file mode 100644
index 000000000..3ff74c938
--- /dev/null
+++ b/libre/sagemath/python-2.7.11.patch
@@ -0,0 +1,11 @@
+--- src/sage/misc/sage_timeit.py.orig 2015-12-19 11:09:42.836938821 +0100
++++ src/sage/misc/sage_timeit.py 2015-12-19 11:10:27.090217304 +0100
+@@ -217,7 +217,7 @@
+ # but is there a better way to achieve that the code stmt has access
+ # to the shell namespace?
+
+- src = timeit_.template % {'stmt': timeit_.reindent(stmt, 8),
++ src = timeit_.template % {'init': "", 'stmt': timeit_.reindent(stmt, 8),
+ 'setup': "pass"}
+ code = compile(src, "<magic-timeit>", "exec")
+ ns = {}