diff options
Diffstat (limited to 'libre/sagemath')
| -rw-r--r-- | libre/sagemath/PKGBUILD | 15 | ||||
| -rw-r--r-- | libre/sagemath/pynac-0.7.1.patch | 42 | ||||
| -rw-r--r-- | libre/sagemath/sagemath-cython0.25.patch | 114 |
3 files changed, 165 insertions, 6 deletions
diff --git a/libre/sagemath/PKGBUILD b/libre/sagemath/PKGBUILD index bd758902e..e720ec07f 100644 --- a/libre/sagemath/PKGBUILD +++ b/libre/sagemath/PKGBUILD @@ -1,4 +1,4 @@ -# $Id: PKGBUILD 196368 2016-11-20 12:14:08Z arojas $ +# $Id: PKGBUILD 196873 2016-11-25 20:11:55Z arojas $ # Maintainer (Arch): Evgeniy Alekseev <arcanis.arch at gmail dot com> # Maintainer (Arch): Antonio Rojas <arojas@archlinux.org> # Contributor (Arch): Daniel Wallace <danielwallace at gtmanfred dot com> @@ -11,12 +11,12 @@ pkgname=sagemath pkgver=7.4 -pkgrel=8.parabola1 +pkgrel=11.parabola1 pkgdesc="Free Mathematics Software, free software replacement of Magma, Maple, Mathematica, and Matlab, without nonfree nauty support" arch=(i686 x86_64 armv7h) url="http://www.sagemath.org" license=(GPL) -depends=(ipython2 ppl palp brial singular cliquer maxima-ecl gfan sympow tachyon python2-rpy2 python2-fpylll +depends=(ipython2 ppl palp brial cliquer maxima-ecl gfan sympow tachyon python2-rpy2 python2-fpylll python2-matplotlib python2-scipy python2-sympy python2-networkx python2-pillow python2-future libgap flintqs lcalc lrcalc arb eclib gmp-ecm zn_poly gd python2-cvxopt pynac linbox rubiks pari-galdata pari-seadata-small planarity rankwidth sage-data-combinatorial_designs sage-data-elliptic_curves sage-data-graphs sage-data-polytopes_db sage-data-conway_polynomials) @@ -38,7 +38,7 @@ provides=(sage-mathematics) source=("$pkgname-$pkgver.tar.gz::https://github.com/sagemath/sage/archive/$pkgver.tar.gz" env.patch skip-check.patch cython-sys-path.patch is-package-installed.patch package.patch disable-fes.patch jupyter-path.patch test-optional.patch python-2.7.11.patch ecm-7.patch increase-rtol.patch sagemath-singular4.patch - sagemath-cython0.25.patch) + sagemath-cython0.25.patch pynac-0.7.1.patch) md5sums=('8311ee35a309dbc668b5148795211254' '784ba3fca83f24ed0bbf62e01fa4e967' '6cafcb381437d4751fd55b25d5090987' @@ -52,7 +52,8 @@ md5sums=('8311ee35a309dbc668b5148795211254' '0c9a57d35de80c2cd418ebec912efbbb' '39d3fded716d2a7ae0ab03e0896b7497' '4bd7305e8b69add8356f9751470cf587' - '0ba2b4266f14b19319ece3996be70511') + 'e76faa070a490de97818762ba340d9dc' + '32da930dcb7c4718acf0188e090c07b9') prepare(){ cd sage-$pkgver @@ -92,11 +93,13 @@ prepare(){ patch -p1 -i ../sagemath-singular4.patch # fix build with cython 0.25 patch -p1 -i ../sagemath-cython0.25.patch +# port to pynac 0.7.1 + patch -p1 -i ../pynac-0.7.1.patch # use python2 sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' -e 's|exec python|exec python2|' -i src/bin/* sed -e 's|cython {OPT}|cython2 {OPT}|' -e 's|python setup.py|python2 setup.py|' -i src/sage/misc/cython.py - sed -e 's|exec ipython|exec ipython2|' -e 's|cygdb|cygdb2|' -i src/bin/sage + sed -e 's|exec ipython|exec ipython2|' -e 's|cygdb|cygdb2|g' -i src/bin/sage sed -e "s|'cython'|'cython2'|" -i src/bin/sage-cython sed -e 's|python -c|python2 -c|' -i src/generate_py_source.mk sed -e 's|bin/python|bin/python2|g' -i src/bin/sage-env diff --git a/libre/sagemath/pynac-0.7.1.patch b/libre/sagemath/pynac-0.7.1.patch new file mode 100644 index 000000000..d0b1e2aee --- /dev/null +++ b/libre/sagemath/pynac-0.7.1.patch @@ -0,0 +1,42 @@ +--- sage-7.4/src/sage/symbolic/constants_c.pyx.orig 2016-11-25 09:34:32.665044510 +0000 ++++ sage-7.4/src/sage/symbolic/constants_c.pyx 2016-11-25 09:38:13.777888000 +0000 +@@ -60,6 +60,8 @@ + self.pointer = <GConstant *>&g_Catalan + elif self._name == "euler_gamma": + self.pointer = <GConstant *>&g_Euler ++ elif self._name == "NaN": ++ self.pointer = <GConstant *>&g_NaN + else: + GConstant_construct(&self.object, name, texname, domain) + self.pointer = &self.object +--- sage-7.4/src/sage/symbolic/ginac.pxd.orig 2016-11-25 09:34:06.145103155 +0000 ++++ sage-7.4/src/sage/symbolic/ginac.pxd 2016-11-25 09:37:14.294686607 +0000 +@@ -216,6 +216,7 @@ + GEx g_Pi "Pi" + GEx g_Catalan "Catalan" + GEx g_Euler "Euler" ++ GEx g_NaN "NaN" + + GConstant* GConstant_construct(void *mem, char* name, char* texname, unsigned domain) + bint is_a_constant "is_a<constant>" (GEx e) +@@ -293,13 +294,13 @@ + void g_list_symbols "list_symbols" (GEx e, GExSet s) + + # more is_a tests +- bint is_a_add "is_a<add>" (GEx e) +- bint is_a_mul "is_a<mul>" (GEx e) +- bint is_a_power "is_a<power>" (GEx e) +- bint is_a_fderivative "is_a<fderivative>" (GEx e) +- bint is_a_function "is_a<function>" (GEx e) +- bint is_exactly_a_function "is_exactly_a<function>" (GEx e) +- bint is_a_ncmul "is_a<ncmul>" (GEx e) ++ bint is_a_add "is_a<GiNaC::add>" (GEx e) ++ bint is_a_mul "is_a<GiNaC::mul>" (GEx e) ++ bint is_a_power "is_a<GiNaC::power>" (GEx e) ++ bint is_a_fderivative "is_a<GiNaC::fderivative>" (GEx e) ++ bint is_a_function "is_a<GiNaC::function>" (GEx e) ++ bint is_exactly_a_function "is_exactly_a<GiNaC::function>" (GEx e) ++ bint is_a_ncmul "is_a<GiNaC::ncmul>" (GEx e) + + # Arithmetic + int ginac_error() diff --git a/libre/sagemath/sagemath-cython0.25.patch b/libre/sagemath/sagemath-cython0.25.patch index b6bcfa5ef..6c88fc0b5 100644 --- a/libre/sagemath/sagemath-cython0.25.patch +++ b/libre/sagemath/sagemath-cython0.25.patch @@ -1,3 +1,117 @@ +From 77eb8e2a40d97d49df24793736a8d9feef485322 Mon Sep 17 00:00:00 2001 +From: Jeroen Demeyer <jdemeyer@cage.ugent.be> +Date: Tue, 13 Sep 2016 14:47:46 +0200 +Subject: [PATCH 1/2] Move old_style_globals to individual modules + +--- + src/sage/calculus/var.pyx | 2 ++ + src/sage/ext/interactive_constructors_c.pyx | 1 + + src/sage/misc/citation.pyx | 5 ++++- + src/sage/misc/fpickle.pyx | 1 + + src/sage/misc/reset.pyx | 5 ++++- + src/sage/misc/sage_timeit_class.pyx | 4 ++-- + src/sage/structure/category_object.pyx | 1 + + src/sage/structure/sage_object.pyx | 1 + + src/setup.py | 4 ---- + 9 files changed, 16 insertions(+), 8 deletions(-) + +diff --git a/src/sage/calculus/var.pyx b/src/sage/calculus/var.pyx +index b11b111..0a18f68 100644 +--- a/src/sage/calculus/var.pyx ++++ b/src/sage/calculus/var.pyx +@@ -1,6 +1,8 @@ ++# cython: old_style_globals=True + """ + Symbolic variables + """ ++ + from sage.symbolic.function_factory import function as new_function + from sage.symbolic.ring import SR + +diff --git a/src/sage/ext/interactive_constructors_c.pyx b/src/sage/ext/interactive_constructors_c.pyx +index 321e368..a9b9bea 100644 +--- a/src/sage/ext/interactive_constructors_c.pyx ++++ b/src/sage/ext/interactive_constructors_c.pyx +@@ -1,3 +1,4 @@ ++# cython: old_style_globals=True + r""" + Constructors that automatically inject variables into the global module scope + """ +diff --git a/src/sage/misc/citation.pyx b/src/sage/misc/citation.pyx +index 77454aa..2053074 100644 +--- a/src/sage/misc/citation.pyx ++++ b/src/sage/misc/citation.pyx +@@ -1,4 +1,7 @@ +-"Dependency usage tracking for citations" ++# cython: old_style_globals=True ++""" ++Dependency usage tracking for citations ++""" + + from sage.misc.all import tmp_filename + from sage.env import SAGE_ROOT +diff --git a/src/sage/misc/fpickle.pyx b/src/sage/misc/fpickle.pyx +index 79520b1..c6d0d74 100644 +--- a/src/sage/misc/fpickle.pyx ++++ b/src/sage/misc/fpickle.pyx +@@ -1,3 +1,4 @@ ++# cython: old_style_globals=True + """ + Function pickling + +diff --git a/src/sage/misc/reset.pyx b/src/sage/misc/reset.pyx +index bd6bc78..bd7c94b 100644 +--- a/src/sage/misc/reset.pyx ++++ b/src/sage/misc/reset.pyx +@@ -1,4 +1,7 @@ +-"Interpreter reset" ++# cython: old_style_globals=True ++""" ++Interpreter reset ++""" + + import sys + +diff --git a/src/sage/misc/sage_timeit_class.pyx b/src/sage/misc/sage_timeit_class.pyx +index 4c369f8..82f421f 100644 +--- a/src/sage/misc/sage_timeit_class.pyx ++++ b/src/sage/misc/sage_timeit_class.pyx +@@ -1,3 +1,5 @@ ++# This is here in Cython so we can access the interpreter globals ++# cython: old_style_globals=True + """ + The ``timeit`` command + +@@ -5,8 +7,6 @@ This uses the function :func:`~sage.misc.sage_timeit.sage_timeit`. + """ + from __future__ import absolute_import + +-# This is here in Cython so we can get the interpreter globals +- + from . import sage_timeit + + +diff --git a/src/sage/structure/category_object.pyx b/src/sage/structure/category_object.pyx +index d9ef9c5..97930d3 100644 +--- a/src/sage/structure/category_object.pyx ++++ b/src/sage/structure/category_object.pyx +@@ -1,3 +1,4 @@ ++# cython: old_style_globals=True + r""" + Base class for objects of a category + +diff --git a/src/sage/structure/sage_object.pyx b/src/sage/structure/sage_object.pyx +index c931a64..4caf4ae 100644 +--- a/src/sage/structure/sage_object.pyx ++++ b/src/sage/structure/sage_object.pyx +@@ -1,4 +1,5 @@ + # -*- encoding: utf-8 -*- ++# cython: old_style_globals=True + r""" + Abstract base class for Sage objects + """ +diff --git a/src/setup.py b/src/setup.py +index c26639d..f094700 100755 --- a/src/setup.py 2016-11-05 19:34:44.701025334 +0000 +++ b/src/setup.py 2016-11-05 19:46:00.706210289 +0000 @@ -562,16 +562,6 @@ |