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Diffstat (limited to '.emacs.d/org-7.4/lisp/ob-octave.el')
| -rw-r--r-- | .emacs.d/org-7.4/lisp/ob-octave.el | 264 |
1 files changed, 0 insertions, 264 deletions
diff --git a/.emacs.d/org-7.4/lisp/ob-octave.el b/.emacs.d/org-7.4/lisp/ob-octave.el deleted file mode 100644 index 9fcd825..0000000 --- a/.emacs.d/org-7.4/lisp/ob-octave.el +++ /dev/null @@ -1,264 +0,0 @@ -;;; ob-octave.el --- org-babel functions for octave and matlab evaluation - -;; Copyright (C) 2010 Free Software Foundation, Inc. - -;; Author: Dan Davison -;; Keywords: literate programming, reproducible research -;; Homepage: http://orgmode.org -;; Version: 7.4 - -;; This file is part of GNU Emacs. - -;; GNU Emacs is free software: you can redistribute it and/or modify -;; it under the terms of the GNU General Public License as published by -;; the Free Software Foundation, either version 3 of the License, or -;; (at your option) any later version. - -;; GNU Emacs is distributed in the hope that it will be useful, -;; but WITHOUT ANY WARRANTY; without even the implied warranty of -;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -;; GNU General Public License for more details. - -;; You should have received a copy of the GNU General Public License -;; along with GNU Emacs. If not, see <http://www.gnu.org/licenses/>. - -;;; Commentary: - -;;; Requirements: - -;; octave -;; octave-mode.el and octave-inf.el come with GNU emacs - -;;; Code: -(require 'ob) -(require 'ob-ref) -(require 'ob-comint) -(require 'ob-eval) -(eval-when-compile (require 'cl)) - -(declare-function matlab-shell "ext:matlab-mode") -(declare-function matlab-shell-run-region "ext:matlab-mode") - -(defvar org-babel-default-header-args:matlab '()) -(defvar org-babel-default-header-args:octave '()) - -(defvar org-babel-matlab-shell-command "matlab -nosplash" - "Shell command to run matlab as an external process.") -(defvar org-babel-octave-shell-command "octave -q" - "Shell command to run octave as an external process.") - -(defvar org-babel-matlab-with-emacs-link nil - "If non-nil use matlab-shell-run-region for session evaluation. - This will use EmacsLink if (matlab-with-emacs-link) evaluates - to a non-nil value.") - -(defvar org-babel-matlab-emacs-link-wrapper-method - "%s -if ischar(ans), fid = fopen('%s', 'w'); fprintf(fid, '%%s\\n', ans); fclose(fid); -else, save -ascii %s ans -end -delete('%s') -") -(defvar org-babel-octave-wrapper-method - "%s -if ischar(ans), fid = fopen('%s', 'w'); fprintf(fid, '%%s\\n', ans); fclose(fid); -else, dlmwrite('%s', ans, '\\t') -end") - -(defvar org-babel-octave-eoe-indicator "\'org_babel_eoe\'") - -(defvar org-babel-octave-eoe-output "ans = org_babel_eoe") - -(defun org-babel-execute:matlab (body params) - "Execute a block of matlab code with Babel." - (org-babel-execute:octave body params 'matlab)) - -(defun org-babel-execute:octave (body params &optional matlabp) - "Execute a block of octave code with Babel." - (let* ((session - (funcall (intern (format "org-babel-%s-initiate-session" - (if matlabp "matlab" "octave"))) - (cdr (assoc :session params)) params)) - (vars (mapcar #'cdr (org-babel-get-header params :var))) - (result-params (cdr (assoc :result-params params))) - (result-type (cdr (assoc :result-type params))) - (out-file (cdr (assoc :file params))) - (full-body - (org-babel-expand-body:generic - body params (org-babel-variable-assignments:octave params))) - (result (org-babel-octave-evaluate - session full-body result-type matlabp))) - (or out-file - (org-babel-reassemble-table - result - (org-babel-pick-name - (cdr (assoc :colname-names params)) (cdr (assoc :colnames params))) - (org-babel-pick-name - (cdr (assoc :rowname-names params)) (cdr (assoc :rownames params))))))) - -(defun org-babel-prep-session:matlab (session params) - "Prepare SESSION according to PARAMS." - (org-babel-prep-session:octave session params 'matlab)) - -(defun org-babel-variable-assignments:octave (params) - "Return list of octave statements assigning the block's variables" - (mapcar - (lambda (pair) - (format "%s=%s" - (car pair) - (org-babel-octave-var-to-octave (cdr pair)))) - (mapcar #'cdr (org-babel-get-header params :var)))) - -(defalias 'org-babel-variable-assignments:matlab - 'org-babel-variable-assignments:octave) - -(defun org-babel-octave-var-to-octave (var) - "Convert an emacs-lisp value into an octave variable. -Converts an emacs-lisp variable into a string of octave code -specifying a variable of the same value." - (if (listp var) - (concat "[" (mapconcat #'org-babel-octave-var-to-octave var - (if (listp (car var)) "; " ",")) "]") - (format "%s" (or var "nil")))) - -(defun org-babel-prep-session:octave (session params &optional matlabp) - "Prepare SESSION according to the header arguments specified in PARAMS." - (let* ((session (org-babel-octave-initiate-session session params matlabp)) - (var-lines (org-babel-variable-assignments:octave params))) - (org-babel-comint-in-buffer session - (mapc (lambda (var) - (end-of-line 1) (insert var) (comint-send-input nil t) - (org-babel-comint-wait-for-output session)) var-lines)) - session)) - -(defun org-babel-matlab-initiate-session (&optional session params) - "Create a matlab inferior process buffer. -If there is not a current inferior-process-buffer in SESSION then -create. Return the initialized session." - (org-babel-octave-initiate-session session params 'matlab)) - -(defun org-babel-octave-initiate-session (&optional session params matlabp) - "Create an octave inferior process buffer. -If there is not a current inferior-process-buffer in SESSION then -create. Return the initialized session." - (if matlabp (require 'matlab) (require 'octave-inf)) - (unless (string= session "none") - (let ((session (or session - (if matlabp "*Inferior Matlab*" "*Inferior Octave*")))) - (if (org-babel-comint-buffer-livep session) session - (save-window-excursion - (if matlabp (unless org-babel-matlab-with-emacs-link (matlab-shell)) - (run-octave)) - (rename-buffer (if (bufferp session) (buffer-name session) - (if (stringp session) session (buffer-name)))) - (current-buffer)))))) - -(defun org-babel-octave-evaluate - (session body result-type &optional matlabp) - "Pass BODY to the octave process in SESSION. -If RESULT-TYPE equals 'output then return the outputs of the -statements in BODY, if RESULT-TYPE equals 'value then return the -value of the last statement in BODY, as elisp." - (if session - (org-babel-octave-evaluate-session session body result-type matlabp) - (org-babel-octave-evaluate-external-process body result-type matlabp))) - -(defun org-babel-octave-evaluate-external-process (body result-type matlabp) - "Evaluate BODY in an external octave process." - (let ((cmd (if matlabp - org-babel-matlab-shell-command - org-babel-octave-shell-command))) - (case result-type - (output (org-babel-eval cmd body)) - (value (let ((tmp-file (org-babel-temp-file "octave-"))) - (org-babel-eval - cmd - (format org-babel-octave-wrapper-method body - (org-babel-process-file-name tmp-file 'noquote) - (org-babel-process-file-name tmp-file 'noquote))) - (org-babel-octave-import-elisp-from-file tmp-file)))))) - -(defun org-babel-octave-evaluate-session - (session body result-type &optional matlabp) - "Evaluate BODY in SESSION." - (let* ((tmp-file (org-babel-temp-file (if matlabp "matlab-" "octave-"))) - (wait-file (org-babel-temp-file "matlab-emacs-link-wait-signal-")) - (full-body - (case result-type - (output - (mapconcat - #'org-babel-chomp - (list body org-babel-octave-eoe-indicator) "\n")) - (value - (if (and matlabp org-babel-matlab-with-emacs-link) - (concat - (format org-babel-matlab-emacs-link-wrapper-method - body - (org-babel-process-file-name tmp-file 'noquote) - (org-babel-process-file-name tmp-file 'noquote) wait-file) "\n") - (mapconcat - #'org-babel-chomp - (list (format org-babel-octave-wrapper-method - body - (org-babel-process-file-name tmp-file 'noquote) - (org-babel-process-file-name tmp-file 'noquote)) - org-babel-octave-eoe-indicator) "\n"))))) - (raw (if (and matlabp org-babel-matlab-with-emacs-link) - (save-window-excursion - (with-temp-buffer - (insert full-body) - (write-region "" 'ignored wait-file nil nil nil 'excl) - (matlab-shell-run-region (point-min) (point-max)) - (message "Waiting for Matlab Emacs Link") - (while (file-exists-p wait-file) (sit-for 0.01)) - "")) ;; matlab-shell-run-region doesn't seem to - ;; make *matlab* buffer contents easily - ;; available, so :results output currently - ;; won't work - (org-babel-comint-with-output - (session - (if matlabp - org-babel-octave-eoe-indicator - org-babel-octave-eoe-output) - t full-body) - (insert full-body) (comint-send-input nil t)))) results) - (case result-type - (value - (org-babel-octave-import-elisp-from-file tmp-file)) - (output - (progn - (setq results - (if matlabp - (cdr (reverse (delq "" (mapcar - #'org-babel-octave-read-string - (mapcar #'org-babel-trim raw))))) - (cdr (member org-babel-octave-eoe-output - (reverse (mapcar - #'org-babel-octave-read-string - (mapcar #'org-babel-trim raw))))))) - (mapconcat #'identity (reverse results) "\n")))))) - -(defun org-babel-octave-import-elisp-from-file (file-name) - "Import data from FILE-NAME. -This removes initial blank and comment lines and then calls -`org-babel-import-elisp-from-file'." - (let ((temp-file (org-babel-temp-file "octave-matlab-")) beg end) - (with-temp-file temp-file - (insert-file-contents file-name) - (re-search-forward "^[ \t]*[^# \t]" nil t) - (if (< (setq beg (point-min)) - (setq end (point-at-bol))) - (delete-region beg end))) - (org-babel-import-elisp-from-file temp-file '(16)))) - -(defun org-babel-octave-read-string (string) - "Strip \\\"s from around octave string" - (if (string-match "^\"\\([^\000]+\\)\"$" string) - (match-string 1 string) - string)) - -(provide 'ob-octave) - -;; arch-tag: d8e5f68b-ba13-440a-a495-b653e989e704 - -;;; ob-octave.el ends here |